If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ), 'gf_id' => 'HOM05D000653', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000653' ), 'data_identifier' => 'HOM05D000653', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000653', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00680' => 'bna', 'A02p39980' => 'bna', 'A04p25580' => 'bna', 'A05p13460' => 'bna', 'A06p35800' => 'bna', 'A07p41690' => 'bna', 'A07p44720' => 'bna', 'A10p02980' => 'bna', 'A10p12200' => 'bna', 'Aa31LG11G4290' => 'aar', 'Aa31LG1G20300' => 'aar', 'Aa31LG2G2130' => 'aar', 'Aa31LG3G10780' => 'aar', 'Aa31LG3G16280' => 'aar', 'Aa31LG4G1280' => 'aar', 'Aa31LG5G4970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3457' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2879' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.482' => 'aag', 'Actinidia04558' => 'ach', 'Actinidia10723' => 'ach', 'Actinidia10724' => 'ach', 'Actinidia14136' => 'ach', 'Actinidia22284' => 'ach', 'Actinidia23522' => 'ach', 'Actinidia33803' => 'ach', 'Actinidia35334' => 'ach', 'Actinidia35936' => 'ach', 'Actinidia40139' => 'ach', 'Ah.04g153240' => 'amhyb', 'Ah.10g025700' => 'amhyb', 'Ah.10g029570' => 'amhyb', 'Ah.12g060720' => 'amhyb', 'Ah.13g071590' => 'amhyb', 'Ah.13g074930' => 'amhyb', 'AL1G14250' => 'aly', 'AL2G19380' => 'aly', 'AL2G40410' => 'aly', 'AL4G27420' => 'aly', 'AL4G28920' => 'aly', 'AL6G21400' => 'aly', 'AL6G36670' => 'aly', 'AL6G36680' => 'aly', 'AL8G30310' => 'aly', 'Aqoxy2G03757' => 'aox', 'Aqoxy3G02003' => 'aox', 'Aqoxy3G03171' => 'aox', 'Aqoxy5G00448' => 'aox', 'Aqoxy7G02392' => 'aox', 'Aqoxy7G03326' => 'aox', 'arahy.Tifrunner.gnm1.ann1.027AMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MJ7K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2L27AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P912R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VMK61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D18SLP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW5W0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCT4V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFI54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8CG94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MB389E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC02MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN5ECJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG1AXF' => 'arhy', 'AT1G04570' => 'ath', 'AT1G64890' => 'ath', 'AT1G79710' => 'ath', 'AT2G32040' => 'ath', 'AT2G33280' => 'ath', 'AT5G10820' => 'ath', 'AT5G25040' => 'ath', 'AT5G25050' => 'ath', 'AT5G54860' => 'ath', 'ATR0568G121' => 'atr', 'ATR0580G120' => 'atr', 'ATR0697G258' => 'atr', 'ATR0752G189' => 'atr', 'ATR0787G090' => 'atr', 'ATR1136G172' => 'atr', 'Atru.chr12.1819' => 'acertr', 'Atru.chr2.3328' => 'acertr', 'Atru.chr2.3387' => 'acertr', 'Atru.chr4.1883' => 'acertr', 'Atru.chr4.2445' => 'acertr', 'Atru.chr7.2548' => 'acertr', 'Atru.chr7.2553' => 'acertr', 'AUR62009010' => 'cqu', 'AUR62015737' => 'cqu', 'AUR62020474' => 'cqu', 'AUR62023292' => 'cqu', 'AUR62024792' => 'cqu', 'AUR62024796' => 'cqu', 'AUR62026825' => 'cqu', 'AUR62032071' => 'cqu', 'AUR62032426' => 'cqu', 'AUR62032428' => 'cqu', 'AUR62032676' => 'cqu', 'AUR62033004' => 'cqu', 'AUR62033674' => 'cqu', 'AUR62034067' => 'cqu', 'AUR62034714' => 'cqu', 'AUR62035365' => 'cqu', 'AUR62043980' => 'cqu', 'BcaB01g04333' => 'bca', 'BcaB01g04334' => 'bca', 'BcaB02g08708' => 'bca', 'BcaB02g10442' => 'bca', 'BcaB05g24732' => 'bca', 'BcaB06g25796' => 'bca', 'BcaB07g29933' => 'bca', 'BcaB08g35853' => 'bca', 'BcaC02g07481' => 'bca', 'BcaC02g07843' => 'bca', 'BcaC03g13334' => 'bca', 'BcaC03g14739' => 'bca', 'BcaC03g17927' => 'bca', 'BcaC04g20290' => 'bca', 'BcaC07g40127' => 'bca', 'BcaC08g47106' => 'bca', 'BcaC08g47289' => 'bca', 'BcaC08g47530' => 'bca', 'BcaNung01423' => 'bca', 'BcaNung02299' => 'bca', 'BcaNung05113' => 'bca', 'BcaNung06639' => 'bca', 'BolC2t06427H' => 'bol', 'BolC2t08322H' => 'bol', 'BolC2t12044H' => 'bol', 'BolC3t19095H' => 'bol', 'BolC4t23305H' => 'bol', 'BolC4t27756H' => 'bol', 'BolC4t28160H' => 'bol', 'BolC5t29056H' => 'bol', 'BolC6t40046H' => 'bol', 'BolC6t40370H' => 'bol', 'BolC7t44805H' => 'bol', 'BolC9t57411H' => 'bol', 'BraA02t05053Z' => 'bra', 'BraA02t08960Z' => 'bra', 'BraA04t18062Z' => 'bra', 'BraA05t20282Z' => 'bra', 'BraA06t26505Z' => 'bra', 'BraA07t31698Z' => 'bra', 'BraA07t31980Z' => 'bra', 'BraA10t42569Z' => 'bra', 'BraA10t43316Z' => 'bra', 'C02p04680' => 'bna', 'C02p21900' => 'bna', 'C02p59860' => 'bna', 'C04p17580' => 'bna', 'C04p62720' => 'bna', 'C04p66590' => 'bna', 'C05p02740' => 'bna', 'C06p38900' => 'bna', 'C06p50070' => 'bna', 'C06p53540' => 'bna', 'C07p42750' => 'bna', 'C09p45420' => 'bna', 'CAN.G1008.9' => 'can', 'CAN.G1094.10' => 'can', 'CAN.G1598.4' => 'can', 'CAN.G231.6' => 'can', 'CAN.G631.65' => 'can', 'CAN.G732.32' => 'can', 'CAN.G812.28' => 'can', 'CAN.G882.1' => 'can', 'CAN.G906.8' => 'can', 'CANSAT21G1548' => 'cansat', 'CANSAT78G0342' => 'cansat', 'CANSAT78G1282' => 'cansat', 'CANSAT80G0023' => 'cansat', 'CANSAT80G0628' => 'cansat', 'CARHR003920' => 'chi', 'CARHR005910' => 'chi', 'CARHR034490' => 'chi', 'CARHR073480' => 'chi', 'CARHR125850' => 'chi', 'CARHR188440' => 'chi', 'CARHR202470' => 'chi', 'CARHR268200' => 'chi', 'Carub.0001s0379' => 'cru', 'Carub.0002s0997' => 'cru', 'Carub.0002s2657' => 'cru', 'Carub.0004s1339' => 'cru', 'Carub.0006s0933' => 'cru', 'Carub.0006s2287' => 'cru', 'Carub.0006s2288' => 'cru', 'Carub.0008s1516' => 'cru', 'Ca_00921_v3' => 'car', 'Ca_10871_v3' => 'car', 'Ca_13059_v3' => 'car', 'Ca_13061_v3' => 'car', 'Ca_14719_v3' => 'car', 'Ca_27071_v3' => 'car', 'CBR_g18969' => 'cbr', 'CBR_g48170' => 'cbr', 'CBR_g55014' => 'cbr', 'Cc03_g03950' => 'ccan', 'Cc03_g06720' => 'ccan', 'Cc03_g06770' => 'ccan', 'Cc05_g13570' => 'ccan', 'Cc08_g07280' => 'ccan', 'Cc08_g07500' => 'ccan', 'Cc09_g04210' => 'ccan', 'CDE02G4397' => 'cde', 'CDE02G4702' => 'cde', 'CDE04G3238' => 'cde', 'CDE05G1296' => 'cde', 'CDE05G2148' => 'cde', 'CDE06G1294' => 'cde', 'CDE06G1692' => 'cde', 'CDE06G2363' => 'cde', 'CDE10G0341' => 'cde', 'CDE11G1043' => 'cde', 'Cfa001854' => 'cfa', 'Cfa014808' => 'cfa', 'Cfa015666' => 'cfa', 'Cfa016105' => 'cfa', 'Cfa020374' => 'cfa', 'Cfa022992' => 'cfa', 'Ciclev10004656m.g' => 'ccl', 'Ciclev10006755m.g' => 'ccl', 'Ciclev10008084m.g' => 'ccl', 'Ciclev10008106m.g' => 'ccl', 'Ciclev10008109m.g' => 'ccl', 'Ciclev10010366m.g' => 'ccl', 'Ciclev10031558m.g' => 'ccl', 'CiPaw.01G167800' => 'cil', 'CiPaw.01G176000' => 'cil', 'CiPaw.02G098300' => 'cil', 'CiPaw.02G098400' => 'cil', 'CiPaw.02G163700' => 'cil', 'CiPaw.05G211200' => 'cil', 'CiPaw.06G036800' => 'cil', 'CiPaw.07G231000' => 'cil', 'CiPaw.07G231600' => 'cil', 'CiPaw.12G128500' => 'cil', 'ClCG02G007810' => 'cla', 'ClCG05G003880' => 'cla', 'ClCG05G005080' => 'cla', 'ClCG06G006290' => 'cla', 'ClCG08G013740' => 'cla', 'ClCG08G013760' => 'cla', 'COL.COLO4_12969' => 'col', 'COL.COLO4_18964' => 'col', 'COL.COLO4_18965' => 'col', 'COL.COLO4_21494' => 'col', 'COL.COLO4_22689' => 'col', 'COL.COLO4_26784' => 'col', 'COL.COLO4_33511' => 'col', 'Cpa.g.sc1119.2' => 'cpa', 'Cpa.g.sc148.34' => 'cpa', 'Cpa.g.sc43.151' => 'cpa', 'Cpa.g.sc59.25' => 'cpa', 'Cpa.g.sc97.29' => 'cpa', 'Cre01.g007737' => 'cre', 'Cre03.g162450' => 'cre', 'Cre06.g311000' => 'cre', 'Cre14.g615900' => 'cre', 'CsaV3_2G032520' => 'csa', 'CsaV3_2G032540' => 'csa', 'CsaV3_2G035940' => 'csa', 'CsaV3_3G011560' => 'csa', 'CsaV3_3G013160' => 'csa', 'CsaV3_7G022430' => 'csa', 'CSS0001707' => 'camsi', 'CSS0001916' => 'camsi', 'CSS0005867' => 'camsi', 'CSS0006482' => 'camsi', 'CSS0007862' => 'camsi', 'CSS0008420' => 'camsi', 'CSS0014909' => 'camsi', 'CSS0018171' => 'camsi', 'CSS0025003' => 'camsi', 'CSS0025983' => 'camsi', 'CSS0026345' => 'camsi', 'CSS0026775' => 'camsi', 'CSS0032959' => 'camsi', 'CSS0043738' => 'camsi', 'CSS0045570' => 'camsi', 'CSS0046179' => 'camsi', 'CSS0047880' => 'camsi', 'CSS0048363' => 'camsi', 'CSS0048583' => 'camsi', 'CSS0048712' => 'camsi', 'DCAR_003014' => 'dca', 'DCAR_003015' => 'dca', 'DCAR_009030' => 'dca', 'DCAR_022554' => 'dca', 'DCAR_024296' => 'dca', 'DCAR_025538' => 'dca', 'DCAR_027227' => 'dca', 'Dinv10286' => 'din', 'Dinv18465' => 'din', 'Dinv18467' => 'din', 'Dinv21429' => 'din', 'Dinv21430' => 'din', 'Dinv23266' => 'din', 'Dinv29370' => 'din', 'Dinv29789' => 'din', 'Dinv40738' => 'din', 'Dinv44547' => 'din', 'Duzib128G1609' => 'dzi', 'Duzib151G0438' => 'dzi', 'Duzib151G0608' => 'dzi', 'Duzib168G0857' => 'dzi', 'Duzib168G2026' => 'dzi', 'Duzib177G0045' => 'dzi', 'Duzib187G1169' => 'dzi', 'Duzib187G1398' => 'dzi', 'Duzib213G0404' => 'dzi', 'Duzib235G0213' => 'dzi', 'Duzib268G0251' => 'dzi', 'ECA232G4106' => 'eca', 'ECA233G1572' => 'eca', 'ECA236G2465' => 'eca', 'ECA246G0540' => 'eca', 'ECA246G2018' => 'eca', 'ECA247G3089' => 'eca', 'EL10Ac2g02485' => 'bvu', 'EL10Ac2g02488' => 'bvu', 'EL10Ac3g06491' => 'bvu', 'EL10Ac3g06809' => 'bvu', 'EL10Ac4g07849' => 'bvu', 'EL10Ac8g19406' => 'bvu', 'Eucgr.B01079' => 'egr', 'Eucgr.C01892' => 'egr', 'Eucgr.C01893' => 'egr', 'Eucgr.C01894' => 'egr', 'Eucgr.C02600' => 'egr', 'Eucgr.F03457' => 'egr', 'Eucgr.H02894' => 'egr', 'Eucgr.K01338' => 'egr', 'Eucgr.L00392' => 'egr', 'FAN01G1439' => 'fan', 'FAN02G0813' => 'fan', 'FAN05G3751' => 'fan', 'FAN07G1415' => 'fan', 'FAN07G1746' => 'fan', 'FAN09G2582' => 'fan', 'FAN09G2812' => 'fan', 'FAN10G3376' => 'fan', 'FAN11G1878' => 'fan', 'FAN12G2146' => 'fan', 'FAN12G2590' => 'fan', 'FAN12G4091' => 'fan', 'FAN14G3663' => 'fan', 'FAN15G0083' => 'fan', 'FAN17G0582' => 'fan', 'FAN17G2439' => 'fan', 'FAN21G1877' => 'fan', 'FAN22G1694' => 'fan', 'FAN25G0396' => 'fan', 'FAN27G0031' => 'fan', 'FvH4_2g41231' => 'fve', 'FvH4_3g22370' => 'fve', 'FvH4_4g05110' => 'fve', 'FvH4_4g16240' => 'fve', 'FvH4_6g28210' => 'fve', 'FvH4_7g34291' => 'fve', 'FvH4_7g34292' => 'fve', 'Glyma.04G112100' => 'gma', 'Glyma.04G119900' => 'gma', 'Glyma.06G318200' => 'gma', 'Glyma.08G314500' => 'gma', 'Glyma.09G029100' => 'gma', 'Glyma.10G247100' => 'gma', 'Glyma.14G101100' => 'gma', 'Glyma.14G108700' => 'gma', 'Glyma.15G134900' => 'gma', 'Glyma.17G218400' => 'gma', 'Glyma.17G224000' => 'gma', 'Glyma.18G099700' => 'gma', 'Glyma.20G147000' => 'gma', 'Gohir.A02G047100' => 'ghi', 'Gohir.A05G060400' => 'ghi', 'Gohir.A05G060600' => 'ghi', 'Gohir.A05G060700' => 'ghi', 'Gohir.A05G117300' => 'ghi', 'Gohir.A09G216700' => 'ghi', 'Gohir.A09G230300' => 'ghi', 'Gohir.A10G118200' => 'ghi', 'Gohir.A13G087100' => 'ghi', 'Gohir.A13G138800' => 'ghi', 'Gohir.D02G049900' => 'ghi', 'Gohir.D05G062600' => 'ghi', 'Gohir.D05G062750' => 'ghi', 'Gohir.D05G062900' => 'ghi', 'Gohir.D05G118200' => 'ghi', 'Gohir.D09G219100' => 'ghi', 'Gohir.D09G231400' => 'ghi', 'Gohir.D10G148500' => 'ghi', 'Gohir.D13G098800' => 'ghi', 'Gohir.D13G143600' => 'ghi', 'Gorai.001G250700' => 'gra', 'Gorai.005G055100' => 'gra', 'Gorai.006G240100' => 'gra', 'Gorai.006G254100' => 'gra', 'Gorai.009G063700' => 'gra', 'Gorai.009G063800' => 'gra', 'Gorai.009G063900' => 'gra', 'Gorai.009G122100' => 'gra', 'Gorai.011G165800' => 'gra', 'Gorai.013G160400' => 'gra', 'GSVIVG01016099001' => 'vvi', 'GSVIVG01017999001' => 'vvi', 'GSVIVG01024264001' => 'vvi', 'GSVIVG01027952001' => 'vvi', 'GSVIVG01035983001' => 'vvi', 'GSVIVG01035987001' => 'vvi', 'GSVIVG01037614001' => 'vvi', 'HanXRQChr01g0022491' => 'han', 'HanXRQChr08g0220661' => 'han', 'HanXRQChr09g0248161' => 'han', 'HanXRQChr09g0274191' => 'han', 'HanXRQChr11g0336311' => 'han', 'HanXRQChr11g0350231' => 'han', 'HanXRQChr15g0492751' => 'han', 'HanXRQChr17g0536411' => 'han', 'HanXRQChr17g0539001' => 'han', 'HanXRQChr17g0539011' => 'han', 'Haze_00353' => 'cav', 'Haze_00881' => 'cav', 'Haze_09655' => 'cav', 'Haze_11489' => 'cav', 'Haze_16693' => 'cav', 'Haze_16701' => 'cav', 'Haze_21387' => 'cav', 'Hma1.2p1_0112F.1_g054930' => 'hma', 'Hma1.2p1_0329F.1_g127320' => 'hma', 'Hma1.2p1_0329F.1_g127330' => 'hma', 'Hma1.2p1_0602F.1_g187450' => 'hma', 'Hma1.2p1_0673F.1_g201200' => 'hma', 'Hma1.2p1_1670F.1_g296610' => 'hma', 'Hma1.2p1_1670F.1_g296620' => 'hma', 'Hma1.2p1_1670F.1_g296635' => 'hma', 'Hma1.2p1_1670F.1_g296650' => 'hma', 'Hma1.2p1_1670F.1_g296660' => 'hma', 'Hma1.2p1_2083F.1_g313590' => 'hma', 'Hma1.2p1_2083F.1_g313596' => 'hma', 'Hma1.2p1_2083F.1_g313610' => 'hma', 'HPP92_003907' => 'vpl', 'HPP92_008469' => 'vpl', 'HPP92_010742' => 'vpl', 'HPP92_010743' => 'vpl', 'HPP92_016079' => 'vpl', 'HPP92_017436' => 'vpl', 'HPP92_017437' => 'vpl', 'HPP92_017463' => 'vpl', 'HPP92_017654' => 'vpl', 'HPP92_020854' => 'vpl', 'HPP92_020855' => 'vpl', 'HPP92_027288' => 'vpl', 'Hund02977' => 'sun', 'Hund02978' => 'sun', 'Hund02980' => 'sun', 'Hund12114' => 'sun', 'Hund12555' => 'sun', 'Hund23262' => 'sun', 'Hund24841' => 'sun', 'Hund24867' => 'sun', 'Hund25614' => 'sun', 'Lalb_Chr06g0160661' => 'lal', 'Lalb_Chr14g0361731' => 'lal', 'Lalb_Chr18g0048881' => 'lal', 'Lalb_Chr18g0058271' => 'lal', 'Lalb_Chr20g0113931' => 'lal', 'Lalb_Chr23g0268171' => 'lal', 'Lj1g0025481' => 'lja', 'Lj3A638T40' => 'lonja', 'Lj3A732T76' => 'lonja', 'Lj3A883G44' => 'lonja', 'Lj3g0007748' => 'lja', 'Lj5g0010175' => 'lja', 'Lj5g0014892' => 'lja', 'Lj5g0017563' => 'lja', 'Lj6C606T6' => 'lonja', 'Lj6g0006989' => 'lja', 'Lj6g0014582' => 'lja', 'Lj7A736T78' => 'lonja', 'Lj7C736G7' => 'lonja', 'Lj7C736T9' => 'lonja', 'Lj7C737T2' => 'lonja', 'Lj8A168T98' => 'lonja', 'Lj9C491T5' => 'lonja', 'Lsat_1_v5_gn_1_1820' => 'lsa', 'Lsat_1_v5_gn_1_76041' => 'lsa', 'Lsat_1_v5_gn_1_92020' => 'lsa', 'Lsat_1_v5_gn_3_22800' => 'lsa', 'Lsat_1_v5_gn_3_25561' => 'lsa', 'Lsat_1_v5_gn_3_25581' => 'lsa', 'Lsat_1_v5_gn_3_38921' => 'lsa', 'Lsat_1_v5_gn_4_85000' => 'lsa', 'Lsat_1_v5_gn_7_109440' => 'lsa', 'Lsat_1_v5_gn_7_68861' => 'lsa', 'Lsat_1_v5_gn_8_67220' => 'lsa', 'Lsat_1_v5_gn_9_46060' => 'lsa', 'Lsat_1_v5_gn_9_64780' => 'lsa', 'Manes.03G125066' => 'mes', 'Manes.03G156700' => 'mes', 'Manes.04G101200' => 'mes', 'Manes.08G159600' => 'mes', 'Manes.15G030000' => 'mes', 'Manes.15G047100' => 'mes', 'Manes.16G130800' => 'mes', 'Manes.16G131200' => 'mes', 'Mapoly0029s0011' => 'mpo', 'Mapoly0094s0073' => 'mpo', 'MBI02_g28328_MAGBIO' => 'mbi', 'MBI07_g08906_MAGBIO' => 'mbi', 'MBI14_g31378_MAGBIO' => 'mbi', 'MBI15_g08394_MAGBIO' => 'mbi', 'MBI15_g27202_MAGBIO' => 'mbi', 'MCO07G546' => 'mco', 'MCO11G178' => 'mco', 'MCO11G736' => 'mco', 'MD03G1205600' => 'mdo', 'MD07G1311100' => 'mdo', 'MD08G1053000' => 'mdo', 'MD08G1053100' => 'mdo', 'MD08G1055000' => 'mdo', 'MD09G1228300' => 'mdo', 'MD13G1195200' => 'mdo', 'MD13G1195300' => 'mdo', 'MD13G1225100' => 'mdo', 'MD16G1195900' => 'mdo', 'MD16G1230000' => 'mdo', 'MD16G1230100' => 'mdo', 'MD17G1226600' => 'mdo', 'Medtr1g014220' => 'mtr', 'Medtr1g014250' => 'mtr', 'Medtr1g103530' => 'mtr', 'Medtr1g103540' => 'mtr', 'Medtr2g031770' => 'mtr', 'Medtr2g031780' => 'mtr', 'Medtr2g031790' => 'mtr', 'Medtr2g031810' => 'mtr', 'Medtr3g008470' => 'mtr', 'Medtr3g051190' => 'mtr', 'Medtr3g118300' => 'mtr', 'Medtr5g007060' => 'mtr', 'MELO3C006365.2' => 'cme', 'MELO3C006523.2' => 'cme', 'MELO3C011303.2' => 'cme', 'MELO3C011307.2' => 'cme', 'MELO3C012658.2' => 'cme', 'MELO3C024748.2' => 'cme', 'Migut.A00364' => 'egut', 'Migut.B01202' => 'egut', 'Migut.D01146' => 'egut', 'Migut.E01451' => 'egut', 'Migut.G00349' => 'egut', 'Migut.G00588' => 'egut', 'Migut.H01838' => 'egut', 'Migut.N00194' => 'egut', 'MSTRG.16995' => 'ama', 'MSTRG.21862' => 'ama', 'MSTRG.25826' => 'ama', 'MSTRG.4038' => 'ama', 'MSTRG.9393' => 'ama', 'MSTRG.9845' => 'ama', 'MSTRG.9975' => 'ama', 'Nitab4.5_0000021g0880' => 'nta', 'Nitab4.5_0000264g0100' => 'nta', 'Nitab4.5_0000321g0160' => 'nta', 'Nitab4.5_0000368g0440' => 'nta', 'Nitab4.5_0000653g0050' => 'nta', 'Nitab4.5_0000749g0150' => 'nta', 'Nitab4.5_0000853g0070' => 'nta', 'Nitab4.5_0000886g0100' => 'nta', 'Nitab4.5_0001362g0060' => 'nta', 'Nitab4.5_0002700g0040' => 'nta', 'Nitab4.5_0002937g0020' => 'nta', 'Nitab4.5_0003474g0020' => 'nta', 'Nitab4.5_0004135g0040' => 'nta', 'Nitab4.5_0004738g0020' => 'nta', 'Nitab4.5_0004745g0020' => 'nta', 'Nitab4.5_0005545g0010' => 'nta', 'Nitab4.5_0006783g0050' => 'nta', 'Nitab4.5_0025976g0010' => 'nta', 'Nn1g00056' => 'nnu', 'Nn1g02356' => 'nnu', 'Nn1g03011' => 'nnu', 'Nn1g03575' => 'nnu', 'Nn1g07111' => 'nnu', 'Nn1g09259' => 'nnu', 'Nn2g12447' => 'nnu', 'Nn2g12454' => 'nnu', 'Nn3g19178' => 'nnu', 'Nn3g19815' => 'nnu', 'Nn4g25078' => 'nnu', 'Nn6g34093' => 'nnu', 'Nn8g40039' => 'nnu', 'Oeu001633.1' => 'oeu', 'Oeu003119.2' => 'oeu', 'Oeu007588.1' => 'oeu', 'Oeu009656.1' => 'oeu', 'Oeu020122.2' => 'oeu', 'Oeu023141.1' => 'oeu', 'Oeu026683.2' => 'oeu', 'Oeu048717.1' => 'oeu', 'Oeu055270.1' => 'oeu', 'Oeu061171.2' => 'oeu', 'Os01g0243200' => 'osa', 'Os03g0795000' => 'osa', 'Os04g0499100' => 'osa', 'Os05g0376400' => 'osa', 'Os05g0389400' => 'osa', 'Os06g0186700' => 'osa', 'Os07g0172900' => 'osa', 'Os07g0425000' => 'osa', 'Os09g0423400' => 'osa', 'Peaxi162Scf00045g01939' => 'pax', 'Peaxi162Scf00045g01945' => 'pax', 'Peaxi162Scf00092g00516' => 'pax', 'Peaxi162Scf00125g01319' => 'pax', 'Peaxi162Scf00192g01212' => 'pax', 'Peaxi162Scf00207g00328' => 'pax', 'Peaxi162Scf00314g01028' => 'pax', 'Peaxi162Scf00516g00429' => 'pax', 'Peaxi162Scf01097g00310' => 'pax', 'PGR031G0957' => 'pgr', 'PGR031G3287' => 'pgr', 'PGR031G3908' => 'pgr', 'PGR118G0001' => 'pgr', 'PGR119G2231' => 'pgr', 'PGR142G1100' => 'pgr', 'PGR142G1147' => 'pgr', 'PGSC0003DMG400001096' => 'stu', 'PGSC0003DMG400001559' => 'stu', 'PGSC0003DMG400026303' => 'stu', 'PGSC0003DMG400026476' => 'stu', 'PGSC0003DMG400028924' => 'stu', 'PGSC0003DMG401016307' => 'stu', 'PGSC0003DMG401032252' => 'stu', 'PGSC0003DMG402016307' => 'stu', 'Phvul.001G041000' => 'pvu', 'Phvul.001G045500' => 'pvu', 'Phvul.005G008400' => 'pvu', 'Phvul.006G040600' => 'pvu', 'Phvul.006G124000' => 'pvu', 'Phvul.007G058300' => 'pvu', 'Potri.001G041600' => 'ptr', 'Potri.006G265500' => 'ptr', 'Potri.006G266000' => 'ptr', 'Potri.008G173600' => 'ptr', 'Potri.010G063800' => 'ptr', 'Potri.010G085900' => 'ptr', 'Potri.011G137300' => 'ptr', 'Potri.011G137400' => 'ptr', 'Potri.013G076300' => 'ptr', 'Potri.018G017100' => 'ptr', 'Potri.018G017400' => 'ptr', 'Potri.019G043000' => 'ptr', 'Pp3c10_2680' => 'ppa', 'Pp3c18_11000' => 'ppa', 'Pp3c19_4580' => 'ppa', 'Pp3c1_14900' => 'ppa', 'Pp3c1_36490' => 'ppa', 'Pp3c21_8500' => 'ppa', 'Pp3c22_1880' => 'ppa', 'Pp3c25_9740' => 'ppa', 'Pp3c2_11310' => 'ppa', 'PRCOL_00002944' => 'pco', 'PRCOL_00006204' => 'pco', 'Prupe.1G015900' => 'ppe', 'Prupe.1G051600' => 'ppe', 'Prupe.1G052100' => 'ppe', 'Prupe.1G395300' => 'ppe', 'Prupe.1G395800' => 'ppe', 'Prupe.1G395900' => 'ppe', 'Prupe.2G330100' => 'ppe', 'Prupe.3G104000' => 'ppe', 'Prupe.4G210100' => 'ppe', 'Psat1g164600' => 'psa', 'Psat5g194120' => 'psa', 'Psat5g227560' => 'psa', 'Psat6g026320' => 'psa', 'Psat6g026520' => 'psa', 'Psat6g206760' => 'psa', 'PSO017G4713' => 'pso', 'PSO017G5737' => 'pso', 'PSO063G0396' => 'pso', 'PSO063G0417' => 'pso', 'PSO063G2389' => 'pso', 'PSO170G5755' => 'pso', 'PSO210G1823' => 'pso', 'PSO210G6519' => 'pso', 'PSO541G4933' => 'pso', 'PSO675G2725' => 'pso', 'PSO782G0024' => 'pso', 'PSO832G4309' => 'pso', 'QL02p018511' => 'qlo', 'QL06p002038' => 'qlo', 'QL06p021847' => 'qlo', 'QL08p011510' => 'qlo', 'QL09p032926' => 'qlo', 'QL09p032928' => 'qlo', 'RcHm_v2.0_Chr1g0384681' => 'rch', 'RcHm_v2.0_Chr2g0132271' => 'rch', 'RcHm_v2.0_Chr4g0396031' => 'rch', 'RcHm_v2.0_Chr4g0415811' => 'rch', 'RcHm_v2.0_Chr5g0038911' => 'rch', 'RcHm_v2.0_Chr5g0039011' => 'rch', 'RcHm_v2.0_Chr6g0299271' => 'rch', 'Rhsim02G0026100' => 'rsi', 'Rhsim02G0216300' => 'rsi', 'Rhsim07G0166000' => 'rsi', 'Rhsim09G0042300' => 'rsi', 'Rhsim09G0214200' => 'rsi', 'RhsimUnG0251600' => 'rsi', 'Sabra01G0028500' => 'sbr', 'Sabra02G0197900' => 'sbr', 'Sabra04G0015100' => 'sbr', 'Sabra06G0208100' => 'sbr', 'Sabra08G0132600' => 'sbr', 'Sabra09G0089600' => 'sbr', 'Sabra10G0057800' => 'sbr', 'Sabra11G0123200' => 'sbr', 'Sabra13G0065500' => 'sbr', 'Sabra18G0020500' => 'sbr', 'Sabra18G0020800' => 'sbr', 'Sabra19G0053600' => 'sbr', 'SalBow2G1062' => 'sbo', 'SalBow2G2637' => 'sbo', 'SalBow3G1906' => 'sbo', 'SalBow4G2715' => 'sbo', 'SalBow4G2996' => 'sbo', 'SalBow5G1483' => 'sbo', 'SalBow8G3979' => 'sbo', 'Sc03g0008710' => 'sci', 'Sc09g0010730' => 'sci', 'Sc09g0010740' => 'sci', 'Sc13g0004500' => 'sci', 'Sc13g0006040' => 'sci', 'Sc13g0006050' => 'sci', 'Sc19g0005640' => 'sci', 'Sc19g0006500' => 'sci', 'Sed0000685' => 'sed', 'Sed0000965' => 'sed', 'Sed0001441' => 'sed', 'Sed0008290' => 'sed', 'Sed0012364' => 'sed', 'Sed0023097' => 'sed', 'Sed0025922' => 'sed', 'Sed0026432' => 'sed', 'SEGI_00648' => 'sgi', 'SEGI_04982' => 'sgi', 'SEGI_10883' => 'sgi', 'SEGI_15767' => 'sgi', 'SEGI_16384' => 'sgi', 'SEGI_30251' => 'sgi', 'SEGI_40549' => 'sgi', 'SGA_v2.0_scaffold119G32798' => 'sas', 'SGA_v2.0_scaffold139G35352' => 'sas', 'SGA_v2.0_scaffold147G36348' => 'sas', 'SGA_v2.0_scaffold151G36729' => 'sas', 'SGA_v2.0_scaffold165G38278' => 'sas', 'SGA_v2.0_scaffold57G20219' => 'sas', 'SGA_v2.0_scaffold74G24598' => 'sas', 'SGA_v2.0_scaffold9G05065' => 'sas', 'SHI00465' => 'shi', 'SHI15011' => 'shi', 'SHI21084' => 'shi', 'SHI26629' => 'shi', 'SMO117G0132' => 'smo', 'SMO337G0062' => 'smo', 'SMO351G0282' => 'smo', 'SMO356G0281' => 'smo', 'SMO358G0697' => 'smo', 'Solyc03g097310.3' => 'sly', 'Solyc03g117710.3' => 'sly', 'Solyc06g054100.2' => 'sly', 'Solyc06g054110.3' => 'sly', 'Solyc06g054120.2' => 'sly', 'Solyc06g068560.3' => 'sly', 'Solyc08g006680.3' => 'sly', 'Solyc09g082200.2' => 'sly', 'Solyc09g090760.4' => 'sly', 'Solyc12g005140.2' => 'sly', 'Sopen03g028080' => 'spe', 'Sopen03g036620' => 'spe', 'Sopen06g025820' => 'spe', 'Sopen08g002630' => 'spe', 'Sopen09g031080' => 'spe', 'Sopen09g033700' => 'spe', 'Sopen09g033710' => 'spe', 'Sopen12g001130' => 'spe', 'Sp1g03410' => 'spa', 'Sp2g22470' => 'spa', 'Sp4g14460' => 'spa', 'Sp4g15590' => 'spa', 'Sp5g31250' => 'spa', 'Sp5g34770' => 'spa', 'Sp6g16830' => 'spa', 'Sp6g32640' => 'spa', 'TAR365G0489' => 'tar', 'TAR365G0834' => 'tar', 'TAR376G0487' => 'tar', 'TAR383G0650' => 'tar', 'TAR625G0073' => 'tar', 'TAR626G0986' => 'tar', 'TAR629G3269' => 'tar', 'TAR636G0733' => 'tar', 'TAR636G2215' => 'tar', 'TAR636G2553' => 'tar', 'TAR636G3273' => 'tar', 'THA.LOC104800958' => 'tha', 'THA.LOC104805721' => 'tha', 'THA.LOC104805723' => 'tha', 'THA.LOC104808170' => 'tha', 'THA.LOC104812422' => 'tha', 'THA.LOC104814984' => 'tha', 'THA.LOC104816051' => 'tha', 'THA.LOC104817660' => 'tha', 'THA.LOC104826100' => 'tha', 'Thecc.04G234100' => 'tca', 'Thecc.04G268300' => 'tca', 'Thecc.05G226700' => 'tca', 'Thecc.06G047400' => 'tca', 'Thecc.07G043000' => 'tca', 'Thecc.09G014000' => 'tca', 'Thecc.09G014100' => 'tca', 'Thecc.09G014500' => 'tca', 'Thhalv10004061m.g' => 'esa', 'Thhalv10007302m.g' => 'esa', 'Thhalv10013335m.g' => 'esa', 'Thhalv10013383m.g' => 'esa', 'Thhalv10016461m.g' => 'esa', 'Thhalv10018559m.g' => 'esa', 'Thhalv10018741m.g' => 'esa', 'TPR.G16570' => 'tpr', 'TPR.G27671' => 'tpr', 'TPR.G38866' => 'tpr', 'TPR.G38881' => 'tpr', 'TPR.G5459' => 'tpr', 'TPR.G8037' => 'tpr', 'TWI09G0029' => 'twi', 'TWI09G1476' => 'twi', 'TWI32G0005' => 'twi', 'TWI34G0002' => 'twi', 'TWI34G0838' => 'twi', 'TWI38G0314' => 'twi', 'TWI60G1259' => 'twi', 'TWI63G0004' => 'twi', 'unitig_26.g8822' => 'ugi', 'unitig_32.g10934' => 'ugi', 'unitig_32.g11690' => 'ugi', 'unitig_46.g18185' => 'ugi', 'unitig_749.g14079' => 'ugi', 'vmacro00538' => 'vma', 'vmacro05121' => 'vma', 'vmacro09730' => 'vma', 'vmacro11268' => 'vma', 'vmacro15351' => 'vma', 'vmacro22189' => 'vma', 'VMungo0540G1712' => 'vmu', 'VMungo0540G2287' => 'vmu', 'VMungo0540G2289' => 'vmu', 'VMungo0647G0140' => 'vmu', 'VMungo0647G1114' => 'vmu', 'VMungo0720G0424' => 'vmu', 'VMungo1080G1408' => 'vmu', 'Zm00001eb016520' => 'zma', 'Zm00001eb060580' => 'zma', 'Zm00001eb078370' => 'zma', 'Zm00001eb117050' => 'zma', 'Zm00001eb122330' => 'zma', 'Zm00001eb287130' => 'zma', 'Zm00001eb301040' => 'zma', 'Zm00001eb306040' => 'zma', 'Zm00001eb313290' => 'zma', 'Zm00001eb374450' => 'zma' ) $gf_id = 'HOM05D000653' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000653' ) $data_identifier = 'HOM05D000653' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 17, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 12, 'sun' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 12, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 9, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb374450' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1